An experimental metagenome data management and analysis system
نویسندگان
چکیده
منابع مشابه
An experimental metagenome data management and analysis system
The application of shotgun sequencing to environmental samples has revealed a new universe of microbial community genomes (metagenomes) involving previously uncultured organisms. Metagenome analysis, which is expected to provide a comprehensive picture of the gene functions and metabolic capacity for microbial communities, needs to be conducted in the context of a comprehensive data management ...
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The Integrated Microbial Genomes with Microbiome Samples (IMG/M: https://img.jgi.doe.gov/m/) system contains annotated DNA and RNA sequence data of (i) archaeal, bacterial, eukaryotic and viral genomes from cultured organisms, (ii) single cell genomes (SCG) and genomes from metagenomes (GFM) from uncultured archaea, bacteria and viruses and (iii) metagenomes from environmental, host associated ...
متن کاملIMG/M: the integrated metagenome data management and comparative analysis system
The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M's data content and analytical capabilities have been extended through regular updates since its first...
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15 صفحه اولAn Experimental Management System
We describe Experiment.perl, an experimental management system, that allows the execution of the entire training and testing pipeline of a machine translation experiment with one configuration files. When carrying out multiple experimental runs with changed settings, Experiment.perl automatically detects which steps need to be re-run and which can be re-used.
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2006
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btl217